core/docs/analysis/weekly-audit-2026-07-22-stragglers-todo.md

Weekly Audit — 2026-07-22 — cleanup-week integrity pass, stragglers, and TODO

Scope: main from PR #76 (compare_multiplicative increment plan) through PR #97 (logos bulk live morph authority) — the week that landed the reader-arc recalibration (ADR-0251), the paradigm consolidation (ADR-0252), the Master Blueprint collision freeze (ADR-0253 + mapping), and Master Convergence Stages 1–4 (#95) plus #96/#97. 134 files, +17,028/−770.

Auditor: Claude (session audit), read-only verification against forgejo/main @ f94dbd40 plus doctrine-authorized hygiene cleanup.

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1. Verified sound (no action)

• Smoke suite green on landed main: 180 passed, 0 failed (2:17), uv run core test --suite smoke -q @ f94dbd40.
• uv lock --check: lock file consistent with pyproject (217 packages).
• ADR status registry vs. mapping doc: ADR-0240 Proposed; 0241–0250 and 0252–0253 Accepted; 0251 partial (§§1–4 ratified) — matches MASTER-BLUEPRINT-2026-07-20-ADR-MAPPING.md registry table exactly.
• Superseded-in-place annotations (ADR-0164, ADR-0174, ADR-0243 sketch pins, ADR-0244 dual-mode excision rewrite) are present and accurate against code: no _axis_projection / _mean_frame_coherence / scalar-L2 remnants in core/; tests/test_stage2_physics_hardening.py pins the removed symbols as absent.
• ADR-0252 §9 retirement record: all five formulations physically moved to docs/paradigm-archive/ with git history preserved (--follow verified); old paths gone from docs/analysis|handoffs|implementation.
• Gate defaults match doc claims: RuntimeConfig.identity_wave_gate = False (core/config.py:301) — consistent with ADR-0244's "live refusal remains flag-gated" and the standing non-authorization.
• No new TODO/FIXME/HACK markers entered *.py across the whole week's diff; no merge-conflict markers anywhere in tracked *.py/*.md.
• New scripts/measure_trackb_*.py are referenced by the Track-B research dossiers (not orphans).
• epistemic-taxonomy-ownership-stage3.md placement in docs/adr/ is deliberate (binding ownership note, not an ADR renumber) — now indexed from docs/adr/README.md (fixed in this PR).

2. Small issues fixed in this PR

1. ADR-0132 dangling parent pointer — pointed at docs/implementation/semantic-symbolic-binding-graph-proposal.md, which ADR-0252 §9 moved to docs/paradigm-archive/. Pointer updated with the retirement annotation.
2. Stale near-duplicate of ratified ADR-0243 — docs/research/ADR-0243-…md still carried Status: Proposed and had drifted from the canonical body by a few annotation lines. Replaced with a tombstone pointing at the canonical Accepted ADR; the one annotation unique to the copy (modality_transition_sandwich ingress note) is preserved in the tombstone.
3. docs/adr/README.md — added an index entry for the binding non-ADR ownership note (epistemic-taxonomy-ownership-stage3.md), which was referenced nowhere.

3. Hygiene cleanup performed (session, no PR needed)

Per the merge-then-cleanup doctrine (branch AND worktree deleted immediately after merge) — all four verified clean and fully merged before removal:

• Worktrees removed: core-postmerge-pr87-integrity-audit (#88), core-relational-operator-ablation (#87), core-wt-trackb (#85), core-wt-trackb2 (#86); matching local branches deleted.
• Forgejo remote branches deleted (0 commits ahead of main): feat/trackb-symbolic-sme-s1, feat/trackb-symbolic-sme-s2s4, fix/a2k-fraction-decrease-scale-range.
• Local main fast-forwarded to forgejo/main (f94dbd40).

4. TODO — items needing a ruling or deeper investigation

• T1 (governance): register convergence-era runtime invariants — or rule that tests suffice. docs/specs/runtime_contracts.md cites no ADR newer than the 0230s. The week landed several fail-closed runtime invariants that are currently enforced only by code + architecture tests: ADR-0244 wave-only identity (MissingWaveStateError), ADR-0253 dual-pack serve boundary (tests/test_pack_draft_serve_boundary.py), #96 fail-closed linguistic governance phases, #97 bulk live morph authority. AGENTS.md invariants (INV-…) also saw zero changes all week. Decide: add contract entries / INV lines, or record explicitly that the arch-test layer is the SoT here.
• T2 (runtime state): stale engine_state/ checkpoint. Smoke emits RuntimeWarning: engine_state checkpoint was written at revision '4b9dbe72…' but the current revision is 'f94dbd40…' (chat/runtime.py:807). Given continuity doctrine, clearing is NOT something to do casually — decide whether to re-baseline the checkpoint on current main or keep it and accept the warning.
• T3 (worktree): Antigravity worktree ~/.gemini/antigravity/worktrees/core/implement-substrate-linguistic-anchors — branch tip is ON main history (0 ahead) but the tree has 4 uncommitted files. Likely superseded by PR #96 (linguistic governance). Reconcile the 4 files, then remove worktree + branch.
• T4 (worktrees): two stale detached demo worktrees — /private/tmp/builder-ii-flagship-demo/demo-worktree and the grok-goal-…/recipe3_demo_loop/demo-worktree under $TMPDIR, both clean, detached @ 18c578d9. Remove via git worktree remove once confirmed no running demo serves from them (left alone in this pass for that reason).
• T5 (branch garden): stale branch sweep. ~50 local branches (many audit-*, backup/*, chore/* from May–June) and ~210 origin/* branches on the GitHub mirror. Needs a batched merged-vs-unmerged triage; separate authorization before any mass deletion.
• T6 (active experiments): ADR-0252 §5 structure-mapping worktrees — core-wt-sme (rnd/structure-mapping-experiment, 1 ahead) and core-wt-sme2 (rnd/sme-experiment-v2, 1 ahead + 2 untracked scripts: extract_sme_corpus.py, test_single_pair.py). Active and authorized; track them to a dossier/PR so the untracked scripts don't rot outside history.
• T7 (ADR annotation): modality_transition_sandwich sentence — the annotation preserved in the ADR-0243 research tombstone exists nowhere in the canonical ADR. If it is load-bearing for the SD-B pin record, fold it into the canonical ADR-0243 annotation under a separate small ruling.
• T8 (declared debt, consolidation): fold the week's declared residuals into next-arc planning. #97's honest accounting (docs/analysis/logos-bulk-live-authority-residual-2026-07-20.md) lists six open residuals (parallel generate/linguistic_pipeline cue tables, lexicon breadth, legacy math/meaning_graph IR outside the morph seam, holonomy crown not LIVE, disconnected pack frames, single plural_abstain rule type). These are declared debt, not stragglers — but they now live only in an analysis doc; pull them into whatever planning artifact governs the next Logos/IR arc so they don't silently age out.
• T9 (docs, minor): historical docs referencing pre-archive paths — docs/workbench/capability-mastery-implementation-plan.md:33,85-86 and docs/briefs/parallel-2026-05-23/L2-opus2-binding-graph-phase1.md cite the retired paradigm docs at their old docs/analysis|implementation/ paths. Both are point-in-time records; either leave as history (default) or annotate with the archive location. No governance weight either way.

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Rulings & execution addendum (2026-07-22, same day)

Shay ruled on T1–T9 (pillars: epistemic rigor / absolute provenance / fail-closed determinism). Execution status:

Item	Ruling	Status
T1	Tests = executable SoT; contracts/AGENTS = governance SoT — register	DONE (this PR): INV-32/33/34 in AGENTS.md + new/updated sections in docs/specs/runtime_contracts.md (wave-only identity, dual-pack boundary, linguistic governance, morph authority)
T2	Re-baseline to f94dbd40 with migration trace	DONE + root cause found. Baseline gen-21702 @ f94dbd404575 (turn 14990, engine_identity parent==self c9e5968a…, scheme 2, schema v2, packs byte-identical across the gap → reconcile MATCH; no MissingWaveStateError exposure — identity consumes the live per-turn field and Shape B+ session persistence is opt-in-off). The warning churn's root cause was the suite itself writing the live store — see T10
T3	Diff antigravity files vs #96; salvage or scrap	DONE: not #96 material — an un-ADR'd anchor-lens/Hamiltonian experiment (fail-open except: pass, unratified serving-physics mutation). Salvaged with full diff → docs/analysis/antigravity-substrate-linguistic-anchors-salvage-2026-07-22.md; worktree + branch scrapped
T4	Nuke /tmp demo worktrees	DONE (both removed; worktree list is now 5, all live)
T5	Hard prune all stale branches; stash unknowns	DONE locally: 178 local branches pruned, every tip SHA stashed in docs/analysis/branch-prune-ledger-2026-07-22.md. Origin mirror (204 branches) pending: bulk remote deletion was tool-permission blocked; operator command in the ledger doc
T6	No untracked logic in active workspaces	DONE: both scripts formalized → rnd/sme-experiment-v2 @ bed29a09. Hazard found & fixed pre-commit: the extractor's glob read ALL of evals/gsm8k_math/** (practice/dev/train/public), exceeding the §5 holdout_dev/v1-only authorization — now scope-pinned
T7	Fold modality_transition_sandwich into canonical ADR-0243	DONE (annotation folded; tombstone updated to point at it)
T8	Escalate #97 residuals into this ledger	DONE — R1–R6 below
T9	Global sweep of pre-archive paths	DONE: 6 references across 3 docs redirected to docs/paradigm-archive/ with per-file provenance notes (ADR-0252 §9 retirement record + archive self-references left as deliberate history)

New findings from the execution pass

• T10 (FIXED + MERGED — PR #100 @ 80100c18): the test suite wrote the live life-store. Module-scoped fixtures (e.g. tests/test_achat.py) construct ChatRuntime() BEFORE the function-scoped isolation fixture exists (pytest sets up wider scopes first), binding the real engine_state/: smoke runs loaded it and committed generations (turn_count 14989→14990 observed). Fix: session-scoped baseline fixture + regression pin; docs/issues/default-engine-state-test-hygiene.md addendum.
• T11 (RULED + EXECUTED 2026-07-22): live-store provenance reset. DECISIVE FINDING: candidates carry NO timestamp / run-id / test-prod field (only a source_turn_trace hash + review_state), and gen-21701 == gen-21702 were byte-identical — "the 465" was the ENTIRE live candidate corpus, not a separable tainted subset, so a surgical per-record quarantine (the original TEST_TAINTED spec) was impossible. The candidates were inert (proposal / contemplation only, never the serving surface). Ruling (Shay): Option (a) — clear, don't asterisk. Executed via scripts/ops/reset_candidate_corpus_t11_20260722.py: an ADR-0219 atomic generation reset (begin → carry recognizers/session/identity+turn_count → empty candidate ledger → commit keep=1). Result: candidates 465 → 0, turn_count 14990 preserved, gen-21701/21702 physically GC'd, current → gen-21703 @ 9a428d84. Idle-tick discovery repopulates organically. turn_count itself left as-is (honest lived count; the pre-fix test turns are not separably identifiable, and resetting the counter would fabricate a number — the candidate corpus was the provenance hazard, not the scalar).
• T12 (pattern watch): experiment scaffolding scope over-reach. The T6 glob hazard suggests a cheap architecture pin: rnd/scripts corpus readers should be lint-checked against sealed/practice eval paths.

R1–R6 — PR #97 declared residuals (escalated per T8; source:

docs/analysis/logos-bulk-live-authority-residual-2026-07-20.md)

• R1 — generate/linguistic_pipeline cue tables (English "sold"/"mkr" hand maps) remain a parallel constraint producer on the governance demo path; they consult no packs/data/he_* morphology and are not answer authority. Migrate onto the Logos morph seam or retire.

• R2 — lexicon breadth: only he_logos_micro_v1 observed surfaces; no full HE/GRC tables, no binyan universals, no GRC case→role.

• R3 — legacy math / meaning_graph IR still parallel outside the Logos morph seam; not migrated onto semantic_primitives.

• R4 — holonomy crown not robust; no LIVE claim.

• R5 — pack frames largely disconnected (sense disambiguation); first-match pack semantics unchanged outside the morph rule.

• R6 — one rule type only (he_morph_v0.plural_abstain); construct-state / prep+case / aspect deferred.

• R7 (opened by the T13 fix, 2026-07-22) — the opt-in telemetry SINK stream (attach_telemetry_sink) still receives the pre-override TurnEvent (pre-resolution surface + empty trace_hash) — the same provisional-then- back-stamped limitation finalize_turn_trace_hash already carries. A single deferred sink emission at the pipeline serve boundary would repair BOTH surface and trace_hash in the durable stream. Deferred (default sink is None, so no live consumer is affected today); own PR when a sink consumer lands.

• T13 (main regression, serving-provenance — telemetry FIXED + MERGED #101): fast lane was red on main (was 0-red 2026-07-16): tests/test_warmed_session_lane.py::TestPipelineOverrideGateInvariants::test_telemetry_consistency_rate_is_one fails at 0.9444 (17/18). Verified pre-existing on unmodified main (fails plain AND state-isolated; unrelated to the T10 isolation fix). Root cause: CognitiveTurnPipeline.run() emits TurnEvent inside runtime.chat() (core/cognition/pipeline.py:287) and only THEN applies the PR #96 fail-closed surface resolution (resolve_surface, line 470) and the PR #97 logos morph override (~line 517) — so an overridden turn serves a surface telemetry never saw. Introduced by e0d1b475 (#96). Reproducer: warmed case "What is doubt?" — TurnEvent carries the pack-grounded surface ("To doubt means to think maybe not. pack-grounded (en_core_meta_v1).") while the pipeline returns the typed refusal ("I cannot certify an answer: the geometric coherence contract is open (goldtether_residual)."). Two decisions for the fix PR: (1) restore single-point surface truth — emit (or re-stamp) TurnEvent AFTER surface resolution; runtime_contracts' selection policy + this lane must move in the same PR per the contract's own rule; (2) rule whether an open goldtether residual should refuse a pack-grounded, honestly-hedged definition at all (possible over-refusal — the pack surface never claimed geometric certification). Note: smoke does not cover this lane, and GitHub Actions are dead signals — nothing gates fast-lane red on main right now.

  Resolution (2026-07-22, PR #101 fix/telemetry-serve-boundary @ 9a428d84, MERGED):

  • (1) FIXED — ChatRuntime.finalize_turn_surface back-stamps the pipeline's resolved surface onto turn_log[-1], a sibling to finalize_turn_trace_hash, called from pipeline.py immediately after the trace-hash back-stamp. Lane green: telemetry_consistency_rate 0.9444 → 1.0 (10/10 warmed_session tests pass). trace_hash byte-identity preserved — it folds the pre-decoration surface, not the served surface.
  • (2) RULED (Shay, 2026-07-22): hedge-arm routing, own PR. The query-type "definitional/epistemic" classifier bypass is REJECTED — it fails a geometric coherence gate OPEN on a lexical cue (fail-open / cue-table; ADR-0252 + INV-34). Ruling: fix the READING, not the question — route open-geometry-but-pack-grounded surfaces to the existing hedge-injection arm (authoritative=False, honestly hedged), discriminated by grounding provenance (structural), never by question type. Its own dedicated PR + GSM8K-style (real-data) validation. Scoped next; deliberately NOT in the telemetry PR or the infra PR.
  • (3) RULED (Shay, 2026-07-22): local pre-push gate — IMPLEMENTED. scripts/hooks/pre-push + scripts/hooks/install.sh (core.hooksPath) run the smoke suite plus the warmed_session lane pin on every push — the targeted gate (NOT the ~9-min full fast-lane, which stays async CI). AGENTS.md §Local-First CI Validation Protocol updated. (This PR.)
  • Durable-sink residual tracked as R7 above.