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Shay 283680f110 feat(adr-0044, adr-0045): domain ethics pack + long-context comparison 
ADR-0044 — Medical / clinical ethics pack (worked-example domain pack).
Ships packs/ethics/medical_clinical_ethics_v1.json with six commitments
partitioned across all three remediation tiers:
  - refuse: no_dosing_recommendation, no_emergency_triage_authority
  - hedge:  defer_diagnosis_to_clinician, surface_evidence_grade
  - audit:  disclose_no_clinician_relationship, respect_patient_autonomy

Ratified end-to-end through scripts/ratify_ethics_pack.py (PACK_IDS
extended).  Production-mode load via load_ethics_pack succeeds.
ChatRuntime composition includes universal safety floor + every medical
commitment.  tests/test_medical_clinical_ethics_pack.py (8 tests) gates
file existence, sealed report, disjoint refusal/hedge lists, and
pack-swap visibility (default pack does NOT carry medical commitments).

ADR-0045 — Long-context recall: CORE vs transformer baselines.
Adds evals/long_context_cost/comparison_runner.py with a deterministic
needle-in-a-haystack measurement at N ∈ {100, 1_000, 10_000, 100_000}.
CORE recall = 100% at every tested N by exact cga_inner scan.

Paired with frozen citations of published transformer NIAH numbers in
evals/long_context_cost/baselines/transformer_long_context.json:
Claude 2.1 (200k, 50%), GPT-4 Turbo 128k (~71%), Gemini 1.5 Pro (99.7%),
NVIDIA RULER (varies).  Each citation carries source + url.

The two components measure different inputs (synthetic versors vs NL
needles) and are not directly comparable benchmark-for-benchmark.  The
comparison is at the architectural level — exact-scan recall vs
attention-based probabilistic recall.  Scope and limits documented in
the ADR.  tests/test_long_context_comparison.py (5 tests) gates schema,
CORE recall == 100%, and baseline citation presence.

CLI integration: two new demo targets with study-grade preambles.
  - core demo pack-measurements          (ADR-0043 — wired)
  - core demo long-context-comparison    (ADR-0045)
README + docs/PROGRESS.md cheatsheets updated.  docs/decisions/README.md
index extended with ADR-0044 + ADR-0045; pack-layer chain title now
"ADR-0027 through ADR-0045".

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-17 22:31:47 -07:00
..
formation feat(formation/templates): four new course templates + shared helpers 2026-05-17 18:59:15 -07:00
__init__.py init: tests, pyproject.toml, AGENTS.md, CLAUDE.md, README.md 2026-05-12 19:15:28 -07:00
test_achat.py test(chat): achat() and arespond() smoke tests — surface, fields, OOV grace, structural determinism 2026-05-14 14:31:49 -07:00
test_admissibility_trace.py feat(adr-0023): Forward Semantic Control proof evidence — Accepted 2026-05-17 12:55:19 -07:00
test_alignment_graph.py Fix test suite errors across core physics and generation 2026-05-14 13:02:32 -07:00
test_architectural_invariants.py feat(epistemic): Leak C read-side audit — INV-24 callsite registry, Leak C fully closed 2026-05-17 09:48:39 -07:00
test_articulation.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_articulation_realizer_v2.py Add articulation realizer v2 2026-05-14 20:14:50 -07:00
test_audit_tour.py feat(adr-0042): audit-tour demo — pack-layer story in four scenes 2026-05-17 22:06:45 -07:00
test_benchmarks_profiler.py feat(benchmarks): discourse_paragraph lane + pipeline profiler + word-selection tracer 2026-05-16 21:53:46 -07:00
test_cga_inner_rust_parity.py feat(adr-0020): parity gates for cga_inner, geometric_product, versor_condition, versor_apply 2026-05-16 20:37:58 -07:00
test_chat_runtime.py Bridge chat OOV grounding 2026-05-13 20:47:28 -07:00
test_cli.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_cli_demo.py docs(cli): self-explanatory demos — preambles + per-directory READMEs 2026-05-17 16:39:50 -07:00
test_cli_pack_validate_security.py Harden pack validator trust boundary 2026-05-15 11:50:15 -07:00
test_cli_test_suites.py Speed up validation lanes and pack loading 2026-05-15 08:26:11 -07:00
test_cognitive_eval_harness.py Add cognitive eval harness and calibration replay (#30) 2026-05-15 07:41:36 -07:00
test_cognitive_turn_pipeline.py Wire intent graph into cognitive pipeline 2026-05-14 20:05:00 -07:00
test_compiler.py feat(core_ingest): IngestPipeline, manifold integration, full test suite 2026-05-13 12:07:12 -07:00
test_compose_relations.py feat(compositionality): compose_relations operator lifts lane 68.8% → 100% 2026-05-16 22:44:06 -07:00
test_core_ingest.py feat: scaffold core_ingest/ governance layer (ADR-0012) 2026-05-13 11:35:00 -07:00
test_core_semantic_seed_pack.py feat(packs): en_core_cognition_v1 v1.2.0 - rhetoric/metaphor/narrative 2026-05-16 15:15:14 -07:00
test_determinism_proofs.py Restore FieldState slots in determinism proof 2026-05-13 14:26:24 -07:00
test_deterministic_hash.py feat: manifold field topology, graph diffusion operator, vertical pulse 2026-05-15 16:02:48 -07:00
test_dialogue.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_dialogue_fluency_regression.py fix: harden session field invariants and eliminate hot-path inefficiencies 2026-05-15 21:37:49 -07:00
test_energy.py Tighten hot-path backend consistency 2026-05-15 08:14:38 -07:00
test_engine_loop_proof.py Tighten session node tracking and generation selection 2026-05-13 14:35:31 -07:00
test_epistemic_invariants.py feat(adr-0021): epistemic_status surface wired across teaching + trace 2026-05-16 20:20:35 -07:00
test_ethics_check.py feat(adr-0034): EthicsCheck — structural surface parallel to SafetyCheck 2026-05-17 20:46:34 -07:00
test_ethics_packs.py feat(adr-0033): ethics packs — third pack-layer sibling to identity + safety 2026-05-17 20:41:04 -07:00
test_ethics_refusal_opt_in.py feat(adr-0037,adr-0038): per-predicate ethics refusal + hedge injection 2026-05-17 21:23:28 -07:00
test_explain.py feat(phase3): core/cognition/explain.py — close Gap 3 introspection 2026-05-16 15:09:48 -07:00
test_forward_semantic_control.py feat(adr-0022): Forward Semantic Control — Accepted 2026-05-17 12:10:20 -07:00
test_generate_stream.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_geometric_product_rust_parity.py feat(adr-0020): parity gates for cga_inner, geometric_product, versor_condition, versor_apply 2026-05-16 20:37:58 -07:00
test_graph_diffusion.py feat: manifold field topology, graph diffusion operator, vertical pulse 2026-05-15 16:02:48 -07:00
test_hedge_injection.py feat(adr-0039): audit completeness — TurnVerdicts bundle, stub TurnEvent, hedge_injected 2026-05-17 21:32:46 -07:00
test_holonomy.py Align holonomy tests with indefinite metric 2026-05-13 12:59:32 -07:00
test_holonomy_resonance.py Implement trilingual field coherence 2026-05-13 19:53:37 -07:00
test_identity_gate.py fix(identity): close v3 paraphrase gap with two-layer override defense 2026-05-16 14:05:55 -07:00
test_identity_packs.py feat(cli): core chat --list-identity-packs + companion-file filter 2026-05-17 19:47:13 -07:00
test_identity_score_decomposition.py feat(surface): ADR-0031 — score-decomposition surface (per-axis hedges) 2026-05-17 20:16:22 -07:00
test_identity_surface_divergence.py feat(identity-packs): ADR-0028 — pack-driven hedge & claim-strength shaping 2026-05-17 19:42:54 -07:00
test_identity_surface_divergence_depth.py feat(surface): ADR-0030 — depth-language hedge wiring 2026-05-17 20:05:45 -07:00
test_inference_operators.py feat(phase3): multi_relation_walk closes Phase 3 v1 to 10/10 splits 2026-05-16 15:24:44 -07:00
test_inner_loop_admissibility.py feat(adr-0024): Phases 2-5 — corpus eval, v2 adversarial, threshold characterization, ADR-0025 design note 2026-05-17 14:07:50 -07:00
test_inner_loop_phase2.py feat(adr-0024): Phases 2-5 — corpus eval, v2 adversarial, threshold characterization, ADR-0025 design note 2026-05-17 14:07:50 -07:00
test_inner_loop_phase3.py feat(adr-0024): Phases 2-5 — corpus eval, v2 adversarial, threshold characterization, ADR-0025 design note 2026-05-17 14:07:50 -07:00
test_inner_loop_phase4.py feat(adr-0024): Phase 1 addendum — retire v1/dev fixture rot 2026-05-17 14:43:34 -07:00
test_intent_proposition_graph.py feat: add intent-proposition graph comprehension layer 2026-05-14 19:52:57 -07:00
test_intent_ratifier.py feat(adr-0022): Forward Semantic Control — Accepted 2026-05-17 12:10:20 -07:00
test_language_pack_cache.py feat(adr-0024): Phase 1 — wire inner-loop admissibility + determinism proof 2026-05-17 13:38:55 -07:00
test_language_pack_runtime.py Implement trilingual field coherence 2026-05-13 19:53:37 -07:00
test_long_context_comparison.py feat(adr-0044, adr-0045): domain ethics pack + long-context comparison 2026-05-17 22:31:47 -07:00
test_manifold.py feat(core_ingest): IngestPipeline, manifold integration, full test suite 2026-05-13 12:07:12 -07:00
test_manifold_state.py feat: manifold field topology, graph diffusion operator, vertical pulse 2026-05-15 16:02:48 -07:00
test_margin_admissibility.py feat(adr-0026): Phase 3 — ranked admissibility with margin 2026-05-17 15:03:03 -07:00
test_medical_clinical_ethics_pack.py feat(adr-0044, adr-0045): domain ethics pack + long-context comparison 2026-05-17 22:31:47 -07:00
test_morphology_irregular.py fix(gaps): close G1+G2+G3 + identity vocab + pipeline safety-stub honour 2026-05-16 21:21:06 -07:00
test_morphology_registry.py Implement trilingual field coherence 2026-05-13 19:53:37 -07:00
test_motor.py Fix full test suite after cognitive runtime 2026-05-13 13:52:11 -07:00
test_null_cone.py init: tests, pyproject.toml, AGENTS.md, CLAUDE.md, README.md 2026-05-12 19:15:28 -07:00
test_oov_grounding_cache.py Cache OOV morphology grounding structures 2026-05-15 11:53:46 -07:00
test_operator_calibration_replay.py Add cognitive eval harness and calibration replay (#30) 2026-05-15 07:41:36 -07:00
test_pack_measurements_phase2.py feat(adr-0043): Phase-2 pack measurements — claims → numbers 2026-05-17 22:19:24 -07:00
test_phase5_corpus.py feat(adr-0024): Phase 5 — stratified mechanism-isolation across 5 failure-mode families 2026-05-17 15:51:59 -07:00
test_phase6_demo.py feat(adr-0024): Phase 6 — comparative demo, three head-to-head conditions 2026-05-17 16:02:37 -07:00
test_pipeline.py feat(core_ingest): IngestPipeline, manifold integration, full test suite 2026-05-13 12:07:12 -07:00
test_pipeline_teaching_integration.py feat: wire teaching loop into cognitive pipeline 2026-05-14 20:46:50 -07:00
test_probe_repl.py Implement trilingual field coherence 2026-05-13 19:53:37 -07:00
test_proof_properties.py feat: Full Proof — surface realizer join, Rust diffusion parity, benchmark harness 2026-05-15 17:39:14 -07:00
test_proposition.py Add proposition generation 2026-05-13 20:08:49 -07:00
test_provenance.py feat(evals): provenance lane v1 — replay determinism + source back-pointers 2026-05-16 11:45:00 -07:00
test_pulse_integration.py feat: Full Proof — surface realizer join, Rust diffusion parity, benchmark harness 2026-05-15 17:39:14 -07:00
test_realizer_quantifier_agreement.py fix(gaps): close G1+G2+G3 + identity vocab + pipeline safety-stub honour 2026-05-16 21:21:06 -07:00
test_refusal_contract.py feat(adr-0024): Phase 2 — honest refusal with typed evidence 2026-05-17 14:49:08 -07:00
test_replay_vs_llm_benchmark.py feat(compositionality): compose_relations operator lifts lane 68.8% → 100% 2026-05-16 22:44:06 -07:00
test_reviewed_teaching_loop.py feat: add reviewed teaching loop for controlled correction learning 2026-05-14 20:32:28 -07:00
test_rotor_admissibility.py feat(adr-0025): Phase 4 — rotor / frame admissibility at the seam 2026-05-17 15:16:32 -07:00
test_rotor_power.py fix(drift): proper rotor-manifold scaling; restore respond contract 2026-05-16 11:44:45 -07:00
test_runtime_config.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_rust_backend.py feat(algebra): null-preserving versor_apply path + un-skip 2 invariant tests 2026-05-16 21:40:37 -07:00
test_safety_check.py feat(safety): ADR-0032 — SafetyCheck structural surface 2026-05-17 20:25:22 -07:00
test_safety_pack.py feat(safety): ADR-0029 — always-loaded, never-replaceable safety pack 2026-05-17 19:56:29 -07:00
test_safety_refusal.py feat(adr-0036): safety-only typed refusal policy 2026-05-17 21:10:52 -07:00
test_salience.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_segmenter.py feat(core_ingest): IngestPipeline, manifold integration, full test suite 2026-05-13 12:07:12 -07:00
test_semantic_realizer_integration.py feat(adr-0023): Forward Semantic Control proof evidence — Accepted 2026-05-17 12:55:19 -07:00
test_sensorium_mount.py feat: scaffold sensorium/ (ADR-0013) + tests/test_architectural_invariants.py + tests/test_sensorium_mount.py 2026-05-13 11:45:16 -07:00
test_session_coherence.py fix(session): CGA-only hemisphere consistency, remove forbidden Euclidean metric 2026-05-15 21:51:16 -07:00
test_surface.py test(surface): full unit test suite for SentenceAssembler — roles, guard, elaboration, languages, determinism 2026-05-14 14:29:46 -07:00
test_telemetry_fanout_and_summary.py feat(adr-0041): core chat --show-verdicts + FanOutSink 2026-05-17 21:47:47 -07:00
test_telemetry_sink.py feat(adr-0040): structured-logging sink for turn-event audit 2026-05-17 21:39:58 -07:00
test_transition_rotor.py fix(algebra): enforce transition rotor invariants 2026-05-15 21:13:14 -07:00
test_turn_loop_verdicts.py feat(adr-0035): turn-loop auto-invocation — surfacing only 2026-05-17 20:57:33 -07:00
test_turn_verdicts_bundle.py feat(adr-0039): audit completeness — TurnVerdicts bundle, stub TurnEvent, hedge_injected 2026-05-17 21:32:46 -07:00
test_unknown_token_ingest.py Ground unknown tokens in ingest 2026-05-13 20:33:20 -07:00
test_vault_config.py fix(tests): align suite with persona-neutral strict-closure contract 2026-05-16 05:37:12 -07:00
test_vault_recall.py Activate and verify Rust backend 2026-05-13 22:23:48 -07:00
test_vault_recall_rust_parity.py feat(rust-parity): vault_recall first surface — bit-identity gate passes 2026-05-16 17:14:22 -07:00
test_vault_recall_vectorised.py feat(phase4): long-context-cost lane + ADR-0019 Stage 1 vault recall vectorisation 2026-05-16 16:39:30 -07:00
test_vault_store.py feat: vault recall index, Rust versor parity, cognitive pack expansion 2026-05-15 15:34:39 -07:00
test_versor_apply_rust_parity.py perf(rust): versor_apply f64 parity port — 29x over Python, bit-identical 2026-05-16 20:43:01 -07:00
test_versor_closure.py feat(algebra): null-preserving versor_apply path + un-skip 2 invariant tests 2026-05-16 21:40:37 -07:00
test_versor_condition_rust_parity.py feat(adr-0020): parity gates for cga_inner, geometric_product, versor_condition, versor_apply 2026-05-16 20:37:58 -07:00
test_vocab_manifold_invariants.py Fail closed on invalid versor construction 2026-05-14 10:55:11 -07:00