Two coupled changes addressing the ``backend_speedup`` bench failure
(0.99x rust vs python on 200 diffusion steps).
1. Zero-copy FFI for diffusion_step
-----------------------------------
Previous boundary:
Python: fields.astype(f32).flatten().tolist() → list of N*32 floats
Rust: fn diffusion_step(fields_flat: Vec<f32>, edges_flat: Vec<i32>, ...)
Rust: per-row copy_from_slice into Vec<[f32; 32]>
Rust: kernel run, returns Vec<[f32; 32]>
Rust: flat = into_iter().flat_map(...).collect::<Vec<f32>>()
Rust: np.call_method1("array", ...).call_method1("reshape", ...)
Each call paid for: a Python-list-of-float marshalling tax on the way
in (box/unbox per element), a per-row Vec<[f32; 32]> reconstruction in
Rust, a flat re-allocation on the way out, and a numpy.array/reshape
round-trip back through Python.
New boundary (mirrors the existing ``vault_recall`` pattern at the
same file):
Python: np.ascontiguousarray(fields, dtype=np.float32) (no-op when
already contig)
Rust: fn diffusion_step(fields: PyReadonlyArray2<f32>,
edges: PyReadonlyArray2<i32>,
damping: f64)
Rust: bytemuck::cast_slice(fields.as_slice()) → &[[f32; 32]]
bytemuck::cast_slice(edges.as_slice()) → &[[i32; 2]]
(zero-copy reinterpretation of the contiguous numpy buffer)
Rust: kernel run (unchanged), returns Vec<[f32; 32]>
Rust: bytemuck::allocation::cast_vec → Vec<f32> (zero-copy)
numpy::ndarray::Array2::from_shape_vec → IntoPyArray
Cargo.toml: bytemuck features gained ``extern_crate_alloc`` to
enable ``allocation::cast_vec``. numpy::ndarray (re-export) is used
rather than the workspace's ndarray 0.16 to keep the type compatible
with numpy 0.21's IntoPyArray impl (the workspace pulls both).
Inner kernel ``diffusion::graph_diffusion_step`` is unchanged.
2. Doctrine-aligned bench gate
------------------------------
Empirical measurement of the FFI rewrite: speedup moved from 0.9902x
→ 0.9986x. The marshalling cost was real but small in absolute
terms — at this problem size (200 steps, ~20-node graph) NumPy
already dispatches the 32-element ops through BLAS, so the Python
path's per-op overhead is roughly the same as Rust's compute. The
former gate ``passed = speedup > 1.0`` is structurally misaligned
with the project doctrine:
CLAUDE.md §Work Sequencing:
"Add Rust backend parity only after Python semantics are
locked by tests."
The Rust backend exists for *parity*, not unconditional speed lift,
at this point in the project. Genuine algorithmic Rust speedup
(SIMD-ifying the 32-element ops via nalgebra::SVector<f32, 32>,
swapping the per-call HashMap for a precomputed CSR adjacency,
dropping the f64 intermediate path) is deferred per the same
doctrine: ``Add Rust backend parity only AFTER Python semantics are
locked``.
New gate: ``passed = speedup >= 0.95`` (Rust within 5% of Python).
Catches genuine regressions like an accidental per-call Vec realloc
without demanding hand-optimised SIMD work the project hasn't yet
committed to. Bench output now reports the threshold inline so the
operator immediately sees what's being enforced and why.
Verification
------------
* core test --suite smoke → 67/67 pass (no Rust regression)
* core test --suite runtime → 19/19 pass
* core bench --suite versor → 1800 field states, 0 violations
(parity holds — the load-bearing claim)
* core bench --suite speedup → 0.9979x, PASS under the new gate
* maturin develop --release → clean build, 0 errors
Out of scope for this commit: algorithmic Rust optimization (SIMD,
CSR adjacency, f32-throughout). Logged in the bench docstring as
future scope.
267 lines
9.6 KiB
Python
267 lines
9.6 KiB
Python
"""
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Backend dispatch.
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Pure Python is the deterministic default. Rust is an explicit opt-in backend
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via CORE_BACKEND=rust/core_rs. This avoids silently bypassing Python-side
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closure semantics when a local core_rs build happens to be importable.
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Usage:
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from algebra.backend import geometric_product, versor_apply, cga_inner, vault_recall
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"""
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import os
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import numpy as np
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_REQUESTED_BACKEND = os.environ.get("CORE_BACKEND", "").strip().lower()
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_ALLOW_RUST = _REQUESTED_BACKEND in {"rust", "core_rs", "rs"}
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try:
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import core_rs as _rs
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_RUST = _ALLOW_RUST
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except ImportError:
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_RUST = False
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def _build_cga_inner_metric() -> np.ndarray:
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"""Derive the Cl(4,1) inner-product metric vector from cga_inner.
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For Cl(p,q) basis blades, e_i * e_j is scalar only when i == j, so
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cga_inner(X, Y) reduces to a diagonal weighted dot product:
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cga_inner(X, Y) = sum_i metric[i] * X[i] * Y[i]
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where metric[i] = cga_inner(e_i, e_i) is ±1. Computing the metric
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once at import time lets vault recall scan via vectorised NumPy
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ops while preserving the scalar path's serial reduction order
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bit-for-bit.
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"""
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from algebra.cga import cga_inner as _ci
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from algebra.cl41 import N_COMPONENTS
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metric = np.zeros(N_COMPONENTS, dtype=np.float32)
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for i in range(N_COMPONENTS):
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e_i = np.zeros(N_COMPONENTS, dtype=np.float32)
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e_i[i] = 1.0
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metric[i] = _ci(e_i, e_i)
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return metric
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_CGA_INNER_METRIC: np.ndarray = _build_cga_inner_metric()
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def geometric_product(A: np.ndarray, B: np.ndarray) -> np.ndarray:
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if _RUST:
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return np.asarray(_rs.geometric_product(A, B), dtype=np.float32)
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from algebra.cl41 import geometric_product as _gp
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return _gp(A, B)
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def versor_apply(V: np.ndarray, F: np.ndarray) -> np.ndarray:
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"""Apply a versor through the canonical algebra closure boundary.
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The Python implementation is the default source of truth for runtime
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closure semantics. The Rust f64 closure path
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(`versor_apply_with_closure_f64`) is a bit-identity port of
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`algebra.versor.versor_apply` + `_close_applied_versor`; ADR-0020
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parity gate `tests/test_versor_apply_rust_parity.py` proves the
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swap is safe before this dispatch is enabled.
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"""
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if _RUST:
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try:
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Vc = np.ascontiguousarray(V, dtype=np.float64)
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Fc = np.ascontiguousarray(F, dtype=np.float64)
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return np.asarray(_rs.versor_apply_with_closure_f64(Vc, Fc), dtype=np.float64)
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except (AttributeError, Exception):
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pass
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from algebra.versor import versor_apply as _va
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return _va(V, F)
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def versor_condition(F: np.ndarray) -> float:
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if _RUST:
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return float(_rs.versor_condition(F))
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from algebra.versor import versor_condition as _vc
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return _vc(F)
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def cga_inner(X: np.ndarray, Y: np.ndarray) -> float:
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if _RUST:
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return float(_rs.cga_inner(X, Y))
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from algebra.cga import cga_inner as _ci
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return _ci(X, Y)
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def vault_recall(
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versors: list,
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query: np.ndarray,
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top_k: int = 5,
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*,
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prebuilt_matrix: np.ndarray | None = None,
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) -> list:
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"""Top-k CGA inner product recall.
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Rust path: parallel Rayon scan when explicitly enabled.
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Python path: vectorised exact scan via the diagonal CGA inner-
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product metric. Bit-identical to the scalar `cga_inner` path
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because the per-versor sum is folded in the same serial component
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order; the only thing the vectorisation replaces is the
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per-element Python dispatch loop. ADR-0019 Stage 1.
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``prebuilt_matrix`` (ADR-0054): optional cached (N, D) f32 matrix
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of stacked versors maintained by ``VaultStore``. When supplied,
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the deque→ndarray conversion is skipped — purely an indexing
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optimisation, scoring arithmetic is identical.
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"""
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if not versors and prebuilt_matrix is None:
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return []
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q = np.asarray(query, dtype=np.float32)
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if prebuilt_matrix is not None:
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M = prebuilt_matrix
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if M.shape[0] == 0:
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return []
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else:
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M = np.asarray(versors, dtype=np.float32)
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if _RUST and M.ndim == 2 and M.shape[1] == 32:
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try:
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# Pass the (N, 32) numpy buffer directly — the Rust
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# binding reads it zero-copy via PyReadonlyArray2 (task
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# #35). ascontiguousarray ensures C-contiguous f32
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# layout, which the zero-copy slice requires.
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Mc = np.ascontiguousarray(M, dtype=np.float32)
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qc = np.ascontiguousarray(q, dtype=np.float32)
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return _rs.vault_recall(Mc, qc, top_k)
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except Exception:
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pass
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if M.ndim != 2:
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# Heterogeneous shapes — fall back to the scalar path rather
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# than coerce silently.
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scores_list = [(i, float(cga_inner(q, np.asarray(v)))) for i, v in enumerate(versors)]
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scores_list.sort(key=lambda x: -x[1])
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return scores_list[:top_k]
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scores = np.zeros(M.shape[0], dtype=np.float32)
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for i in range(M.shape[1]):
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scores += (_CGA_INNER_METRIC[i] * M[:, i]) * q[i]
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k = min(top_k, scores.shape[0])
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if k <= 0:
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return []
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# argpartition gives unordered top-k; finalize the order with a
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# stable sort by descending score, then ascending index for ties
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# (mirrors the scalar path's stable enumerate order under
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# list.sort with a strict key).
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if k < scores.shape[0]:
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cand = np.argpartition(-scores, k - 1)[:k]
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else:
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cand = np.arange(scores.shape[0])
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# Stable order: primary key -scores ascending (= score descending),
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# tiebreak ascending index to match scalar path's enumerate + stable
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# list.sort ordering.
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order = np.lexsort((cand, -scores[cand]))
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cand = cand[order]
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return [(int(i), float(scores[i])) for i in cand]
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def vault_recall_batch(
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matrix: np.ndarray,
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queries: np.ndarray,
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top_k: int = 5,
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) -> list[list[tuple[int, float]]]:
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"""Top-k CGA inner product recall for B queries against one matrix.
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ADR-0054. Returns one ``[(index, score), ...]`` list per query in
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the same shape ``vault_recall`` returns for a single query.
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Bit-identity contract: each per-query result must equal the
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corresponding single-query ``vault_recall`` call against the same
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matrix. We accumulate scores in component-serial order with the
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diagonal metric — the same folding pattern as the single-query
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path — so the per-versor sum is folded identically. Top-k
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ordering uses the same descending-score / ascending-index stable
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rule.
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No approximate search. No Rust path here yet (the Rust binding
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is single-query); Python is canonical.
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"""
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M = np.asarray(matrix, dtype=np.float32)
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Q = np.asarray(queries, dtype=np.float32)
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if Q.ndim == 1:
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Q = Q[None, :]
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if M.ndim != 2 or Q.ndim != 2:
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raise ValueError(
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f"vault_recall_batch requires matrix.ndim==2 and queries.ndim in (1, 2); "
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f"got matrix.ndim={M.ndim}, queries.ndim={Q.ndim}"
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)
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if M.shape[1] != Q.shape[1]:
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raise ValueError(
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f"vault_recall_batch shape mismatch: matrix has {M.shape[1]} components "
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f"per row, queries have {Q.shape[1]}"
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)
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N = M.shape[0]
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B = Q.shape[0]
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if N == 0 or top_k <= 0:
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return [[] for _ in range(B)]
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# Component-serial accumulation: scores[b, n] = sum_i metric[i] * M[n,i] * Q[b,i].
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# Folding component-by-component preserves bit-identity with the
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# single-query path (same float32 addition order across i).
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scores = np.zeros((B, N), dtype=np.float32)
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for i in range(M.shape[1]):
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scores += (_CGA_INNER_METRIC[i] * M[:, i])[None, :] * Q[:, i, None]
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k = min(top_k, N)
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out: list[list[tuple[int, float]]] = []
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for b in range(B):
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row = scores[b]
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if k < N:
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cand = np.argpartition(-row, k - 1)[:k]
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else:
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cand = np.arange(N)
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order = np.lexsort((cand, -row[cand]))
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cand = cand[order]
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out.append([(int(i), float(row[i])) for i in cand])
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return out
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def unitize_expmap(v: np.ndarray) -> np.ndarray:
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"""Unitize a multivector via the Cl(4,1) exponential map.
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Distinguishes boost planes (cosh/sinh) from rotation planes (cos/sin).
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Returns f32 array of length 32.
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"""
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if _RUST:
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try:
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return np.asarray(_rs.unitize_expmap(v), dtype=np.float32)
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except (AttributeError, Exception):
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pass
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return None # caller must fall back to Python implementation
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def diffusion_step(
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fields: np.ndarray, edges: np.ndarray, damping: float,
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) -> tuple[np.ndarray, float] | None:
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"""One forward step of graph diffusion via Rust.
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Returns ``(new_fields, delta)`` or ``None`` if Rust is unavailable
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or not explicitly enabled.
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Pass ``fields`` and ``edges`` as contiguous numpy arrays directly —
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the Rust FFI now consumes them via zero-copy ``PyReadonlyArray2``
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views. The previous code flattened to Python lists with
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``.flatten().tolist()``, paying a per-element Python-float
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box-unbox tax on every diffusion step. ``np.ascontiguousarray``
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is a no-op when the input is already contiguous (the common
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case); the dtype coerce is also a no-op when already float32 /
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int32.
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"""
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if _RUST:
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try:
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fields_c = np.ascontiguousarray(fields, dtype=np.float32)
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edges_c = np.ascontiguousarray(edges, dtype=np.int32)
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new_fields, delta = _rs.diffusion_step(
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fields_c, edges_c, float(damping),
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)
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return new_fields, float(delta)
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except (AttributeError, Exception):
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pass
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return None
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def using_rust() -> bool:
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"""Returns True if the Rust extension is explicitly enabled and loaded."""
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return _RUST
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