Shay 89defef30b chore(audit): substrate cleanup — dead spike, gitignore, deprecation, reader diagnosis ... C1: delete generate/math_versor_arithmetic.py and its 3 tests (ADR-0139 add-only arithmetic spike; no runtime consumers, no pipeline wiring, follow-on lift paused per module docstring). C3: gitignore engine_state runtime artifacts (manifest.json, recognizers.jsonl, discovery_candidates.jsonl). Module code (engine_state/__init__.py) remains tracked; generated checkpoint files should not be. C5: document reader zero-delta root cause in train_sample/v1/README.md. Both Phase 2 (whole-problem) and Phase 1 (question-only) reader paths are called but inert because all 47 refusals are statement-level NO_INJECTOR gaps, not question-sentence gaps. Reader unblocks when injector coverage expands (C2 work). report.json use_reader flag corrected to reflect last run. C6: add deprecation header to generate/math_parser.py pointing at generate.math_candidate_graph.parse_and_solve as the live path. C2/C4 briefs: docs/handoff/CLEANUP-C2-run-lane-migration.md and docs/handoff/CLEANUP-C4-compositions-compile.md added as operator dispatch docs for the medium-scope wiring tasks.		2026-05-28 07:00:33 -07:00
..
adr	feat(runtime): opt-in unified-ingest path (ADR-0090, audit Findings 6+7) (#95)	2026-05-20 21:00:27 -07:00
architecture	feat(physics): add mind-physics layer — ADR-0008/0009/0010, blueprint, and operator stubs	2026-05-12 23:20:58 -07:00
audit	fix(phase2): close W-006/W-010/W-013/W-014/W-019 operator decisions (#270)	2026-05-25 11:34:19 -07:00
briefs	feat(W-019): learning-arc demo — engine-authored proposal from contemplation (ADR-0152) (#276)	2026-05-25 13:03:10 -07:00
curriculum	docs(adr-0087): rhetorical style as selection axis + writing-chain harvester spec (#72)	2026-05-20 16:09:16 -07:00
decisions	docs(brief-C): comprehension reader audit — zero eval delta diagnosis + next steps	2026-05-27 20:45:31 -07:00
evals	docs(evals): articulation benchmark preamble — discourse-planner spine	2026-05-19 12:47:38 -07:00
handoff	chore(audit): substrate cleanup — dead spike, gitignore, deprecation, reader diagnosis	2026-05-28 07:00:33 -07:00
handoffs	docs(handoff): Brief 11 — Phase 2 reader closure + capability snapshot sequencing (#342)	2026-05-27 05:03:40 -07:00
implementation	docs: propose semantic-symbolic binding graph layer (#170)	2026-05-23 09:58:39 -07:00
plans	docs(plan): add CORE general advancement path (#314)	2026-05-26 18:32:08 -07:00
research	docs(epistemic): align audit terminology with runtime enum	2026-05-28 04:17:19 -07:00
sessions	docs(session): 2026-05-26 corridor closure — first GSM8K lift + workbench operational (#305)	2026-05-26 13:49:08 -07:00
workbench	feat(W-028): chat surface + trace drawer (#303)	2026-05-26 13:22:11 -07:00
admissibility-exemplars.md	feat(ADR-0163.B.2): four new exemplar corpora — discrete_count_statement, multiplicative_aggregation, currency_amount, plus temporal_aggregation v2 widening (#306)	2026-05-26 14:36:59 -07:00
capability_roadmap.md	docs: Phase 5 GSM8K-math substrate completion sweep (ADR-0119 + sub-phases + ADR-0114a 10/10)	2026-05-22 20:39:24 -07:00
ethics_packs.md	feat(adr-0034): EthicsCheck — structural surface parallel to SafetyCheck	2026-05-17 20:46:34 -07:00
EVAL_AUDIT_2026-05-20.md	chore(evals): contracts + bench json + Lane B viewer + chart + audit + demo schema (#62)	2026-05-20 13:53:13 -07:00
eval_methodology.md	feat: ADR-0113 rename expert-demo → audit-passed; reserve expert namespace (ADR-0114 GSM8K roadmap)	2026-05-22 15:36:10 -07:00
formation_pipeline_plan.md	docs: teaching-order doctrine + refresh formation/roadmap status	2026-05-17 18:48:44 -07:00
frontier_baselines.md	feat(evals): frontier structural-zero baselines for Phase 2 v1 lanes	2026-05-16 12:45:28 -07:00
gaps.md	Add chain-first capability ledger and domain seeds (#97)	2026-05-20 21:33:24 -07:00
hitl-backpressure.md	feat(ADR-0161.3): submission-time invariants — duplicate + dependent_on_pending auto-reject (#313)	2026-05-26 16:46:25 -07:00
holdout_recipients.txt	feat: ADR-0119.1 — seal fabrication_control holdout with age encryption (Obligation #1)	2026-05-22 17:22:46 -07:00
identity_packs.md	feat(surface): ADR-0031 — score-decomposition surface (per-axis hedges)	2026-05-17 20:16:22 -07:00
master-plan-post-substrate-audit.md	docs(session): 2026-05-26 corridor closure — first GSM8K lift + workbench operational (#305)	2026-05-26 13:49:08 -07:00
pack_inventory_2026-05-21.md	docs: pack inventory 2026-05-21 — strengths, weaknesses, leverage gaps (#84)	2026-05-20 19:59:18 -07:00
position_paper.md	Update position_paper.md	2026-05-27 18:27:18 -07:00
PROGRESS.md	docs(session): 2026-05-26 corridor closure — first GSM8K lift + workbench operational (#305)	2026-05-26 13:49:08 -07:00
recognizer-registry.md	feat(ADR-0163.D): wire ratified RecognizerSpecs into math_candidate_graph admissibility surface (#302)	2026-05-26 13:11:47 -07:00
refusal-taxonomy.md	feat(ADR-0163.A): refusal taxonomy lane — shape categorization of GSM8K admissibility gaps (#297)	2026-05-26 11:27:11 -07:00
reviewers.yaml	fix(quarantine): drain all 60 quarantined tests — QUARANTINE=∅ (#267)	2026-05-25 11:22:12 -07:00
runtime_contracts.md	docs: Phase 5 GSM8K-math substrate completion sweep (ADR-0119 + sub-phases + ADR-0114a 10/10)	2026-05-22 20:39:24 -07:00
RUST.md	Activate and verify Rust backend	2026-05-13 22:23:48 -07:00
safety_packs.md	feat(safety): ADR-0032 — SafetyCheck structural surface	2026-05-17 20:25:22 -07:00
teaching_order.md	feat(identity-packs): ADR-0027 — swappable identity manifold via packs	2026-05-17 19:24:39 -07:00
test-debt-quarantine.md	ci: full-pytest gate + QUARANTINE registry (49 known failures, uv) (#263)	2026-05-25 06:21:04 -07:00
truth_seeking_schema.md	feat(epistemic): contradiction coherence checker — CONTESTED transitions wired, last Tier 4.5 row closes	2026-05-17 10:36:48 -07:00
Whitepaper.md	docs: Phase 5 GSM8K-math substrate completion sweep (ADR-0119 + sub-phases + ADR-0114a 10/10)	2026-05-22 20:39:24 -07:00
Yellowpaper.md	docs: Phase 5 GSM8K-math substrate completion sweep (ADR-0119 + sub-phases + ADR-0114a 10/10)	2026-05-22 20:39:24 -07:00